PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.255290.1
Common NameCsa_3G135660, LOC101210812
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 227aa    MW: 25536.8 Da    PI: 5.9224
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.255290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-1075122454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rEr RR+++N++f  L   l ++   +++K +K +iL  A++ +++L
  Cucsa.255290.1  75 SKACRERLRREKLNDRFLDLSIALEPS---RHTKTNKPAILDDAIRVLNQL 122
                     5678***********************...******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.83971122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.22E-774127No hitNo description
SuperFamilySSF474591.7E-1274142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1175144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-875122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-877128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDPLEDSSCW DFLDCSFFPD ADNLINPSLH PFWPPNHSRR DSLADTDVSA GHLESEENDC  60
SRKRARDGSC AGASSKACRE RLRREKLNDR FLDLSIALEP SRHTKTNKPA ILDDAIRVLN  120
QLKNEAEELK QTNEKLREEV ESLKAEKNDL RKEKIILKED KEKMEQQLKS IAIPSPGLIP  180
GHPAAYHAAS GKMAVFPGYG LIPMWQYLPP SIRDTSQDHE LRPPAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00102PBMTransfer from AT4G14410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-123LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-123LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134070.11e-167PREDICTED: transcription factor bHLH104-like
SwissprotQ8L4671e-78BH104_ARATH; Transcription factor bHLH104
TrEMBLA0A0A0L7551e-167A0A0A0L755_CUCSA; Uncharacterized protein
STRINGPOPTR_0010s08360.12e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81792537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.23e-71bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]